PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco026491.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LSD
Protein Properties Length: 317aa    MW: 32720.2 Da    PI: 8.5811
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco026491.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD131.43.2e-104468125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 Cg+Cr l sYP GA +V+Ca+C +V
  Aco026491.1 44 CGSCRELVSYPKGAVHVQCACCRAV 68
                 ***********************98 PP

2zf-LSD138.61.8e-12106130125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+C  lL+YP+GAp+VRC++C +V
  Aco026491.1 106 CGKCSLLLMYPYGAPAVRCSSCYHV 130
                  **********************998 PP

3zf-LSD138.51.9e-12244268125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+C  lL+YP+GAp+VRC+ C +V
  Aco026491.1 244 CGKCSLLLMYPYGAPAVRCSFCYHV 268
                  **********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014473.4E-62533No hitNo description
TIGRFAMsTIGR010531.3E-134171IPR005735Zinc finger, LSD1-type
PfamPF069432.7E-94468IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.4E-8104131IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-9106130IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.5E-8242269IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-9244268IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MMGSSPETSP PPGFEILDPS PPPPPPPPPP PPPPPLPEMG QMVCGSCREL VSYPKGAVHV  60
QCACCRAVNF VLEGSIINIS HSGVASSSSS SSSPSSAAHQ VGNIKCGKCS LLLMYPYGAP  120
AVRCSSCYHV TEIGVGAAVA CDRDDGELPG DVPSPGLRNP RPFSSAASAE APFSASASAS  180
ASSPRNGSNG LRKLSRACFL SERRCSRSVR LLSSSKLRFR RVASSSSSSS SPSSAAHQVG  240
NVKCGKCSLL LMYPYGAPAV RCSFCYHVTE IGVAHNSWPS LSGQQGQTAP SLPSFSAGVV  300
KLRCIRAYAL HEASSE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091597.15e-32PREDICTED: protein LOL2
STRINGVIT_00s0181g00230.t011e-29(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133952525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.16e-24lsd one like 2